I came up with a ColdFusion-only hackish solution for the whitespace problem caused by query of queries. Brad suggested I hardcode a temp table into a random SQL database on our server, which is also a good hackish solution, but required database access. Because I was doing all of this work without accessing the database, I wanted to come up with a solution I could implement just in ColdFusion.The solution was to add a character to the beginning and ending of the string which prevented the whitespace from being trimmed. Then whenever I actually used the string, I removed the first and last character. 
[code]<cfset crlf = Chr(13) & Chr(10)> 
<cfset tab = chr(09)>
<cfset testingwithwhitespace = crlf & tab & tab & "Value Without Tabs and Spaces" & crlf & tab & tab & crlf & tab & tab & crlf>
<cfset testingwithoutwhitespace = "Value Without Tabs and Spaces"> 
 <cfsavecontent variable="testingHTML">
				
			<html>
				<head>
					<title>White Space Test</title>
				</head>
				<body>
					<div>White Space Test</div>
				</body>
			</html>
</cfsavecontent> 
<cfset qryTesting = QueryNew("Description,testvalue")>
<cfset rowid = queryAddRow(qryTesting)>
<cfset querySetCell(qryTesting,"Description","Testing String with whitespace",rowid)>
<cfset querySetCell(qryTesting,"testvalue","~" & testingwithwhitespace & "~",rowid)>
<cfset rowid = queryAddRow(qryTesting)>
<cfset querySetCell(qryTesting,"Description","Testing String without whitespace",rowid)>
<cfset querySetCell(qryTesting,"testvalue","~" & testingwithoutwhitespace & "~",rowid)>
<cfset rowid = queryAddRow(qryTesting)>
<cfset querySetCell(qryTesting,"Description","Testing HTML",rowid)>
<cfset querySetCell(qryTesting,"testvalue","~" & testingHTML & "~",rowid)>

<h1 align="center">Before Query of Query</h1>
<cfoutput query="qryTesting">
	#qryTesting.description#<hr />
	<span style="background:yellow">#HTMLCodeFormat(MID(qryTesting.testvalue,2,len(qryTesting.testvalue)-2))#</span><br /><br />
</cfoutput>

<cfquery dbtype="query" name="qofqAutoTrim">
	SELECT Description,testvalue
	FROM qryTesting
</cfquery>
<h1 align="center">After Query of Query</h1>
<cfoutput query="qofqAutoTrim">
	#qofqAutoTrim.description#<hr />
	<span style="background:yellow">#HTMLCodeFormat(MID(qofqAutoTrim.testvalue,2,len(qofqAutoTrim.testvalue)-2))#</span><br /><br />
</cfoutput>
[/code]
I'm not going to post the output of the code again, suffice it to say it's now exactly the same. Yay!! Problem Solved!